Category: Education

Installing RStudio Server on Mac OS X Mavericks

RStudio Server provides a browser based interface to a version of R running on a remote computer. It is only supported on linux, though. We have just ordered the new Mac Pro and want to run RStudio Server from that

Posted in Education, Oligoinformatics

Predictive modeling in drug discovery

Predictive modeling, that is, the process of developing a mathematical tool or model that generates an accurate prediction, is the topic in a new book just published by Springer titled Applied Predictive Modeling, by Kuhn and Johnson. Pre-clinical drug discovery

Posted in Education

How to install the VienneRNA package 2 on mac OSX 10.8.5

The ViennaRNA package provides a nice set of tools to predict secondary structures of RNA. On mac, the source code needs to be compiled locally. Below follows step-by-step instructions for how to do this. This has been tested on both

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PhD positions at the Department of Biology, University of Copenhagen

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Posted in COAT, Education, Research, Sequencing Tagged with: , ,

How to efficiently read in large bedgraph files in R

This post is a bit R programming-technical, but I have spent quite some time finding a solution, so I thought I would share it anyway. < p>First some background. One of the factors Will at slip… Used opposed not the

Posted in Education, Oligoinformatics, Sequencing

RNA BBQ

On Tuesday August 21st we will be BARBECUING RNA of several different kinds (with and without chloroplasts)! Everyone (even remotely..) affiliated with the summer course on RNA are welcome. But registration is required in order for us to know how

Posted in Education, Social

The transcriptome ‐ from functional RNAs to RNA drugs

We now (finally) have the program for the symposium on the 24th of August in the Lundbeckfond Auditorium, Copenhagen Biocenter. The symposium is arranged together with Center for non-coding RNA in Technology and Health and sponsored by the The Danish

Posted in COAT, Conferences, Education, miRNA, Oligoinformatics, Uncategorized

Ph.D. summer school closed for applications

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Summer school on RNA biology and drugs

< p>There is an exciting PhD course to take place from the 20th to the 24th of August in Copenhagen. The course will cover the following topics: parallel sequencing technologies, microRNA Biology and ‐targeting, protein‐RNA interactions, RNA structure Into in

Posted in COAT, Education, miRNA, Sequencing

How vast is the chemical space of RNA drugs?

Chemical space By chemical space is meant the space spanned by all chemical compounds. As of January 2012, there are more than 64 million organic and inorganic substances reported in the scientific literature (link). This is, however, still only a

Posted in Education, Oligoinformatics